Background briefing: Sustaining the Soil Microbiome

The soil microbiome, communities of microorganisms in soils, underpin natural processes in soil habitats and are affected by environmental and land use change. This POSTnote gives an overview of the benefits provided by the soil microbiome, ways of assessing the soil microbiome, and measures to improve its condition.

Soils are one of the most biodiverse habitats on Earth, with an estimated 4,000 to 50,000 species of microorganism per gram of soil. The ‘soil microbiome’ refers to communities of microbes within the soil, which include bacteria and fungi, but also archaea (single-celled organisms initially identified in extreme habitats), protists (single-celled organisms that, unlike bacteria, contain a nucleus) and viruses. However, although they constitute a large part of the UK’s biodiversity, many soil organisms remain unknown. The soil microbiome underpins many of the ecosystem services that benefit humans, which include:

• movement and exchange of key plant growth limiting nutrients such as nitrogen and phosphorus;
• protection of plants from stress, pests and pathogens;
• decontamination of soils through bioremediation;
• helping to maintain the physical structure of soil;
• decomposition of organic wastes while storing carbon;
• regulating the flow of greenhouse gases, such as carbon dioxide and methane; and,
• a repository of undiscovered biochemicals, including antibiotics, that can be used to address antibiotic resistance

Soil health is defined in the academic literature as the capacity of a soil to function as a living ecosystem and support to sustain plants, animals and humans, and maintain environmental quality. The Government's 25 Year Environment Plan highlight the importance of soil health and stated an ambition to manage England's soils sustainably by by 2030.

Key points in this POSTnote include:

• The soil microbiome refers to the diverse communities of bacteria, fungi and other microorganisms in soil habitats.
• Soil microbes underpin key benefits that soils provide, such as food production, the clean-up of pollutants, and carbon storage in soil organic matter.
• Conventional agricultural practices and climate change can drive changes in soil microbiomes that result in soils providing fewer benefits.
• New genomic and chemical analyses can characterise the soil microbiome, increasing understanding of the roles it performs.
• Protecting and restoring the soil microbiome has both economic and environmental benefits, but there is a lack of studies on measures for achieving this.